Welcome to Nemaktis’s documentation!

Introduction

• Overview
  • License
  • Contributors
  • Highlights
  • Limitations
  • Contact
• Installation
  • With Conda (windows or linux)
  • Developper method (only linux)
• Microscopy model for Nemaktis
  • 1. General description
  • 2. Koehler illumination setup
  • 3. Transmission/Reflection of light inside the object
  • 4. Imaging of the object
  • 5. Optical elements for polarized optical micrographs
• Accuracy and efficiency of Nemaktis’ backends
  • 1. Introduction
  • 2. Results with 2D meshes
  • 3. Results with 3D meshes

High-level python interface

• Tutorial
  • Defining the optical axes
  • Defining a LCMaterial
  • Propagating optical fields through the sample
  • Visualising optical micrographs
• API Reference
  • TensorField
  • DirectorField
  • QTensorField
  • LCMaterial
  • LightPropagator
  • OpticalFields
  • FieldViewer

Backends

• Ray-tracing backend
• Beam propagation backend
• Diffractive transfer matrix backend